Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015907768.1_cds_XP_016457887.1_51567
CDS Infomation

[gene=LOC107781665] [db_xref=GeneID:107781665] [protein=RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2] [protein_id=XP_016457887.1] [location=complement(join(52024..52315,52462..52643,54843..54959,55530..55617,55750..55833,56572..56675,56853..56921,56999..57115,58333..58446,58536..58646,58836..59081,59161..59232,59327..59398,59495..59542))] [gbkey=CDS]
Sequence

ATGCACTGTAAGGAACGCCTTGTACCTGAGGAGGTGGCCCTACTGGTGACATGTTTAAAA
GCTTTGTCAGGATCAGTTTCTTGTCTAGACATTGTTCACCATCAAAGCCTTCTTTCATCT
ATTTTAGGAATGAGCATGTGGAACTATGGGACTGATGTAATGGATGCTTTGATGGAATTA
CTTATATCCTTGGCTACATCTGGTGGGCAGTATGTCGATTTGTGCCTGGAAATGCTTGTG
AACAATTTTGTGCCTCCTCCTTCATTCATATCATTGTTGAATCAGCCACATGGCATTCTA
CGAAAGGGCCAAGTTATTGATCGTGTCCATTCAACTTTAATAGACATTGCAGAGTTAGTT
CCTCTCTCCCCCTTGAGACTTGAGAAGATAGTAAAGGAGAAGATGCATAAGATGCCAATC
AATTACACAAAGGAACCATTCATCATGGCATATGTGGAGAACATGTTAAAACTGGAGGGT
GGAGCAATTGGTGGTCTTGTTGGGAGAACTATGCTTGTGGCAATTATGGATTGGCTGATA
GATCTGGATGTAGACATTGCATGGGATGAAATCTTAAATGAGGATTTCACCAAATGCATC
TTCGATATGGAGCTGGAAGATCTGGATGGTCCAGTAGATGACGGTCAGCAAGATGGTGAC
CAGCTCCGAATTTCTTGGATGGAACGGCTTGGAAATGCCAGTGCTCAAAAATTGGATAGC
TTGATGGTGCTTACCTTTGAACACCTTAACTTTTGCAAAGAGAGTGGACGCCTGAGTCAG
GTTTTTGAGACTCTTCTCCAGTCTTTTCAGCATACTGTTTTGACGGCATACAAGTCTAAA
TTTGCTCAGTTTGTGATGTTTTATGCCTGTACCCTGGATCCTGAAAACTGCGGCAGGAGA
TTTGCTGATACACTATTTGATATATTTAAGAGCAGTATCTATCCACAATGGAGAATGAGT
GCTGTTGCCTATCTTGCTAGTTATTTGGCTCGTGCAAAGTTTTTGTCTATCTCATCTGTT
GCTGAATATGTAGAAAGTTTGGTTGAATGGTGTTCCACGTATTGCTCCAACCAGAGTGGT
GGCATCAATCCAAAAGCTCACAAGGAATTTTATGCTGGGTGCCAGGCCATGATGTACATA
CTTTGTTTTCGCATGAGATCAATGCTTGCTATTCCTCGTATCAGGTCACGGCTCTCAAAG
CACATAGAGGATATCTTGAGGCATCCATTGAGCCCCTTAATGGTATGCTTGCCATCAGTA
GTGAAAGAATTTCTTCGGTTGGCAAAAGTAACTAATCTTGATGTGCCTGATAACTTTGTA
TCAAGTGGTGTGCTCGAGTCTGATCTTTCAGTCTCTTTTGGTGGTAGAGAAAGGCTTGAC
ATGTTTTTCCCATTTGATCCTTGTCTGCTATTGAGATCTGACAGATTCATCCGGCCAAAT
TTTGTGTACTGGTCAATGGTTCGGAGCTCATATGACAACGATGAGGATGATGATGAGGGT
ACTAGTGATGAAGACGATATTGAAATCTGTACTGCAGGGAAGGGGATGAATATAGCTGAT
GGAGTCGCCAGAAGTTATGATCAGGATGTAGATGAATTTGATAATGAAATGAGCAAAATG
TCCATAACACCTAAAGTTGCTCAATGGTTTGGAGGTGAATTACGACCTGACATGCAGATG
CCTTCAAGAATCAGACCATGTCCGGAGTCCTTGTAG

Peptide Sequence

PEP ID

XP_016457887.1
PEP Infomation

PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2 [Nicotiana tabacum]
Sequence

MHCKERLVPEEVALLVTCLKALSGSVSCLDIVHHQSLLSSILGMSMWNYGTDVMDALMEL
LISLATSGGQYVDLCLEMLVNNFVPPPSFISLLNQPHGILRKGQVIDRVHSTLIDIAELV
PLSPLRLEKIVKEKMHKMPINYTKEPFIMAYVENMLKLEGGAIGGLVGRTMLVAIMDWLI
DLDVDIAWDEILNEDFTKCIFDMELEDLDGPVDDGQQDGDQLRISWMERLGNASAQKLDS
LMVLTFEHLNFCKESGRLSQVFETLLQSFQHTVLTAYKSKFAQFVMFYACTLDPENCGRR
FADTLFDIFKSSIYPQWRMSAVAYLASYLARAKFLSISSVAEYVESLVEWCSTYCSNQSG
GINPKAHKEFYAGCQAMMYILCFRMRSMLAIPRIRSRLSKHIEDILRHPLSPLMVCLPSV
VKEFLRLAKVTNLDVPDNFVSSGVLESDLSVSFGGRERLDMFFPFDPCLLLRSDRFIRPN
FVYWSMVRSSYDNDEDDDEGTSDEDDIEICTAGKGMNIADGVARSYDQDVDEFDNEMSKM
SITPKVAQWFGGELRPDMQMPSRIRPCPESL

Transcript Sequence

Gene sequence data has not been registered.